Aug 25 – 29, 2025
Lecture Hall D
Europe/Berlin timezone

Exploring the effects of isotope depletion on proteins by native mass spectrometry and cryogenic electron microscopy

Aug 28, 2025, 11:00 AM
15m
VMP 6 / Philturm (Lecture Hall D)

VMP 6 / Philturm

Lecture Hall D

Von-Melle-Park 6 20146 Hamburg

Speaker

Anjusha Mathew

Description

Isotope depleted protein samples have successfully addressed various challenges in native mass spectrometry (MS), notably by enhancing the signal-to-noise (S/N) ratio- an advantage particularly beneficial for high molecular weight protein analysis. In this study, we explore the broader impact of isotope depletion on reducing sample heterogeneity, and enhancing mass spectral quality in MS, as well as in improving imaging resolution in cryogenic electron microscopy (cryo-EM). Together, these two techniques offer a more detailed visualization of higher-order molecular structure of proteins with high spatial and mass resolutions.
We successfully expressed and purified test proteins of varied MW, in isotope depleted media. Native mass spectra of these samples showed a distinctive shift towards monoisotopic peaks and a reduction in mass window as compared to the proteins grown in normal media, confirming effective isotope depletion. The improved S/N ratio also enhanced sequence coverage in top-down proteomic analysis in isotope depleted proteins compared to the normal ones. The study extends to cryo-EM to assess the potential improvements in imaging resolution and any structural alterations induced by isotope depletion.

User consent yes

Author

Sneha Hakke

Co-authors

Carmen Iglesias López David Clarke David Kilgour Kèvin Knoops Ron Heeren Anjusha Mathew Ye Gao

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